CPA and tax attorney here. Missing an annual report filing is more common than you think, but it needs to be addressed promptly. The consequences depend entirely on your state of incorporation.
Here is what typically happens when you miss an annual report deadline:
- Most states impose a late filing penalty ranging from $25 to $200, depending on teh jurisdiction
- If the report remains unfiled for an extended period (usually 12-24 months), the state may administratively dissolve your entity
- Administrative dissolution does NOT automatically terminate your S-Corp election with the IRS -- those are separate matters
- You can usually reinstate by filing the delinquent reports, paying all back fees, and submitting a reinstatement application
Regarding your S-Corp election specifically: IRS Form 2553 is a federal filing, and your S-Corp status remains intact even if the state dissolves your entity. However, if the state dissolution means your entity no longer exists under state law, the IRS may argue the election terminated because there is no longer a valid corporation to be an S-Corp.
The critical step right now is to check your state Secretary of State website to see your entity current standing. If it shows inactive or dissolved, you need to file for reinstatement immediately. In most states, reinstatement relates back to the date of dissolution, meaning your entity is treated as if it was never dissolved.
I would strongly recommend engaging a business attorney or CPA who handles entity compliance. The cost to reinstate is usually a few hundred dollars in fees and penalties, which is far less than the tax consequences of losing your S-Corp election.